I am a Bioengineering graduate student at University of Washington.
Longitudinal multi-omics associate PASC with auto-antibodies, viremia, and comorbidities.
Integrated plasma proteome and metabolome with single-cell RNAseq reveal metabolic reprogramming in COVID-19 patients.
Analyzed antigen specificity of TCR sequences specific to SARS-CoV-2 polymerase.
Python package for performing robustness analysis to characterize how the dynamics of biological networks respond to changes in parameters.
Snakemake workflow for processing GVCF files to generate multi-sample VCF of exon variants.
Snakemake workflow for inferring cell-cell communication from single-cell RNAseq dataset by running cellphonedb.
Python package for single cell analysis of immune and cancer cells. It includes preprocessing, dimension reduction, clustering, annotation, visualization, differential expression testing, TCR analysis, and additional integration with existing single cell packages.
Python package for calculating overlap metrics between TCR sequences from single cell RNAseq data and/or bulk TCR seq data and post-analysis of GLIPH antigen specificity.
Snakemake workflow for performing fusion detection and quantification by pseudoalignment using kallisto and pizzly.
University of Washington2020-Present Ph.D in Bioengineering | ||
California Institute of Technology (Caltech)2014-2018 B.S. in Bioengineering |
